Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03453 | Not Available | Negative | 3944042 - 3944617 | 21025.2 |
| conjugative transposon tran protein | HMPREF1534_03454 | Not Available | Negative | 3944620 - 3945606 | 37093.8 |
| conjugative transposon tram protein | HMPREF1534_03455 | Not Available | Negative | 3945651 - 3947021 | 49533.6 |
| hypothetical protein | HMPREF1534_03456 | Not Available | Negative | 3946990 - 3947310 | 12245.0 |
| conjugative transposon trak protein | HMPREF1534_03457 | Not Available | Negative | 3947317 - 3947940 | 24030.7 |
| conjugative transposon traj protein | HMPREF1534_03458 | Not Available | Negative | 3947972 - 3948976 | 37219.9 |
| hypothetical protein | HMPREF1534_03459 | Not Available | Negative | 3948980 - 3949516 | 20758.3 |
| hypothetical protein | HMPREF1534_03460 | Not Available | Negative | 3949509 - 3951344 | 72038.6 |
| hypothetical protein | HMPREF1534_03461 | Not Available | Positive | 3951746 - 3951886 | 5282.54 |
| hypothetical protein | HMPREF1534_03462 | Not Available | Positive | 3951844 - 3952161 | 11646.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


