Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03393 | Not Available | Negative | 3870942 - 3871136 | 7498.88 |
| hypothetical protein | HMPREF1534_03394 | Not Available | Negative | 3871149 - 3871349 | 7626.2 |
| hypothetical protein | HMPREF1534_03395 | Not Available | Negative | 3871356 - 3871562 | 7728.22 |
| hypothetical protein | HMPREF1534_03396 | Not Available | Positive | 3871710 - 3872132 | 15444.5 |
| hypothetical protein | HMPREF1534_03397 | Not Available | Negative | 3872544 - 3872756 | 7887.81 |
| hypothetical protein | HMPREF1534_03398 | Not Available | Positive | 3873197 - 3874825 | 62482.0 |
| gtp-binding protein typa/bipa | HMPREF1534_03399 | Not Available | Positive | 3874891 - 3876693 | 67463.5 |
| hypothetical protein | HMPREF1534_03400 | Not Available | Negative | 3876754 - 3878322 | 58002.8 |
| hypothetical protein | HMPREF1534_03401 | Not Available | Negative | 3878404 - 3880044 | 62840.6 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03402 | Not Available | Negative | 3880051 - 3883347 | 121048.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


