Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03363 | Not Available | Negative | 3852353 - 3852832 | 17515.8 |
| hypothetical protein | HMPREF1534_03364 | Not Available | Negative | 3852860 - 3853246 | 13716.0 |
| hypothetical protein | HMPREF1534_03365 | Not Available | Negative | 3853259 - 3853723 | 17191.3 |
| hypothetical protein | HMPREF1534_03366 | Not Available | Negative | 3853723 - 3854946 | 44775.1 |
| atp-dependent clp endopeptidase, proteolytic subunit clpp | HMPREF1534_03367 | Not Available | Negative | 3854957 - 3855994 | 38757.1 |
| hypothetical protein | HMPREF1534_03368 | Not Available | Positive | 3856193 - 3856639 | 16686.0 |
| hypothetical protein | HMPREF1534_03369 | Not Available | Positive | 3856641 - 3858209 | 60163.2 |
| hypothetical protein | HMPREF1534_03370 | Not Available | Positive | 3858228 - 3858653 | 16451.7 |
| hypothetical protein | HMPREF1534_03371 | Not Available | Positive | 3858655 - 3860043 | 52744.3 |
| hypothetical protein | HMPREF1534_03372 | Not Available | Positive | 3860043 - 3861476 | 55305.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


