Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03323 | Not Available | Positive | 3793574 - 3794836 | 47808.0 |
| hypothetical protein | HMPREF1534_03324 | Not Available | Positive | 3794829 - 3795581 | 28790.7 |
| hypothetical protein | HMPREF1534_03325 | Not Available | Negative | 3795695 - 3798187 | 93212.2 |
| mta/sah nucleosidase | HMPREF1534_03326 | Not Available | Positive | 3798271 - 3798966 | 25128.0 |
| s-ribosylhomocysteine lyase | HMPREF1534_03327 | Not Available | Positive | 3798980 - 3799465 | 18458.3 |
| hypothetical protein | HMPREF1534_03328 | Not Available | Positive | 3799725 - 3800594 | 33487.3 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03329 | Not Available | Positive | 3800995 - 3804231 | 120622.0 |
| hypothetical protein | HMPREF1534_03330 | Not Available | Positive | 3804246 - 3806033 | 68067.3 |
| hypothetical protein | HMPREF1534_03331 | Not Available | Positive | 3806130 - 3807107 | 37151.9 |
| hypothetical protein | HMPREF1534_03332 | Not Available | Positive | 3807191 - 3809617 | 88624.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


