Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine recombinase xerd | HMPREF1534_03303 | Not Available | Positive | 3769357 - 3770283 | 35767.4 |
| hypothetical protein | HMPREF1534_03304 | Not Available | Positive | 3770445 - 3772121 | 60983.1 |
| hypothetical protein | HMPREF1534_03305 | Not Available | Positive | 3772259 - 3773308 | 39811.4 |
| mg chelatase-like protein | HMPREF1534_03306 | Not Available | Positive | 3773314 - 3774852 | 56404.1 |
| hypothetical protein | HMPREF1534_03307 | Not Available | Negative | 3774911 - 3775399 | 17716.9 |
| radical sam enzyme, rsam/lipoprotein system protein | HMPREF1534_03308 | Not Available | Negative | 3775411 - 3776490 | 41500.1 |
| hypothetical protein | HMPREF1534_03309 | Not Available | Positive | 3776755 - 3778374 | 62497.7 |
| hypothetical protein | HMPREF1534_03310 | Not Available | Positive | 3778520 - 3778864 | 12516.3 |
| hypothetical protein | HMPREF1534_03311 | Not Available | Positive | 3778962 - 3779168 | 7642.15 |
| hypothetical protein | HMPREF1534_03312 | Not Available | Positive | 3779385 - 3780545 | 44906.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


