Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein assembly complex, yaet protein | HMPREF1534_03293 | Not Available | Positive | 3759487 - 3762132 | 100823.0 |
| hypothetical protein | HMPREF1534_03294 | Not Available | Positive | 3762155 - 3762670 | 19034.7 |
| hypothetical protein | HMPREF1534_03295 | Not Available | Positive | 3762727 - 3763230 | 19225.3 |
| glutamate racemase | HMPREF1534_03296 | Not Available | Positive | 3763425 - 3764180 | 28357.2 |
| pyridoxal kinase | HMPREF1534_03297 | Not Available | Positive | 3764185 - 3765105 | 34415.6 |
| hypothetical protein | HMPREF1534_03298 | Not Available | Negative | 3765129 - 3766364 | 45529.9 |
| ribosome-binding factor a | HMPREF1534_03299 | Not Available | Negative | 3766371 - 3766706 | 12940.9 |
| hypothetical protein | HMPREF1534_03300 | Not Available | Negative | 3766721 - 3767359 | 24555.7 |
| pyruvate kinase | HMPREF1534_03301 | Not Available | Negative | 3767371 - 3768834 | 54483.9 |
| 3-dehydroquinate dehydratase, type ii | HMPREF1534_03302 | Not Available | Negative | 3768868 - 3769290 | 15629.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


