Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03263 | Not Available | Negative | 3724966 - 3725283 | 12010.5 |
| peroxiredoxin | HMPREF1534_03264 | Not Available | Negative | 3725300 - 3725866 | 21156.2 |
| hypothetical protein | HMPREF1534_03265 | Not Available | Positive | 3726184 - 3727107 | 35686.6 |
| hypothetical protein | HMPREF1534_03266 | Not Available | Negative | 3727191 - 3728306 | 42521.0 |
| hypothetical protein | HMPREF1534_03267 | Not Available | Negative | 3728303 - 3729688 | 50003.1 |
| hypothetical protein | HMPREF1534_03268 | Not Available | Negative | 3729722 - 3732118 | 90525.5 |
| hypothetical protein | HMPREF1534_03269 | Not Available | Positive | 3732388 - 3733827 | 53744.7 |
| glycosyl hydrolase family 109 protein 1 | HMPREF1534_03270 | Not Available | Negative | 3733924 - 3735342 | 53265.9 |
| alpha-1,3-galactosidase b | HMPREF1534_03271 | Not Available | Negative | 3735404 - 3737188 | 66703.3 |
| hypothetical protein | HMPREF1534_03272 | Not Available | Negative | 3737368 - 3739116 | 66712.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


