Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03253 | Not Available | Negative | 3713855 - 3717112 | 116874.0 |
| hypothetical protein | HMPREF1534_03254 | Not Available | Negative | 3717157 - 3717654 | 19891.1 |
| hypothetical protein | HMPREF1534_03255 | Not Available | Positive | 3718340 - 3718483 | 5357.52 |
| c-terminal processing peptidase | HMPREF1534_03256 | Not Available | Negative | 3718452 - 3720152 | 63012.3 |
| hypothetical protein | HMPREF1534_03257 | Not Available | Negative | 3720196 - 3721182 | 35410.1 |
| Trna-asn | Not Available | Not Available | Positive | 3721263 - 3721339 | Not Available |
| Trna-asn | Not Available | Not Available | Positive | 3721357 - 3721433 | Not Available |
| alkyl hydroperoxide reductase, f subunit | HMPREF1534_03260 | Not Available | Negative | 3721504 - 3722787 | 45909.3 |
| hypothetical protein | HMPREF1534_03261 | Not Available | Positive | 3723000 - 3723515 | 19056.7 |
| hypothetical protein | HMPREF1534_03262 | Not Available | Positive | 3723633 - 3724919 | 49043.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


