Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr02254 family had hydrolase | HMPREF1534_03233 | Not Available | Positive | 3687811 - 3688500 | 26779.5 |
| hypothetical protein | HMPREF1534_03234 | Not Available | Negative | 3688580 - 3690220 | 61032.8 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03235 | Not Available | Negative | 3690252 - 3693212 | 109908.0 |
| hypothetical protein | HMPREF1534_03236 | Not Available | Positive | 3693612 - 3694751 | 43930.1 |
| hypothetical protein | HMPREF1534_03237 | Not Available | Negative | 3694981 - 3696393 | 51775.3 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03238 | Not Available | Negative | 3696415 - 3699249 | 105287.0 |
| hypothetical protein | HMPREF1534_03239 | Not Available | Negative | 3699340 - 3699428 | 3336.17 |
| nad-dependent deacetylase | HMPREF1534_03240 | Not Available | Negative | 3699518 - 3700216 | 25968.2 |
| hypothetical protein | HMPREF1534_03241 | Not Available | Positive | 3700344 - 3700928 | 21331.6 |
| hypothetical protein | HMPREF1534_03242 | Not Available | Positive | 3700949 - 3701809 | 31165.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


