Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5,10-methylenetetrahydrofolate reductase | HMPREF1534_03213 | Not Available | Negative | 3667601 - 3668554 | 35997.3 |
| cardiolipin synthase | HMPREF1534_03214 | Not Available | Negative | 3668750 - 3670006 | 48250.6 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_03215 | Not Available | Positive | 3670240 - 3671307 | 38915.8 |
| hypothetical protein | HMPREF1534_03216 | Not Available | Positive | 3671307 - 3674438 | 115459.0 |
| hypothetical protein | HMPREF1534_03217 | Not Available | Positive | 3674435 - 3675805 | 51154.7 |
| hypothetical protein | HMPREF1534_03218 | Not Available | Negative | 3675771 - 3675929 | 6421.8 |
| hypothetical protein | HMPREF1534_03219 | Not Available | Negative | 3676035 - 3677393 | 52811.7 |
| hypothetical protein | HMPREF1534_03220 | Not Available | Positive | 3678023 - 3678403 | 14525.7 |
| redox-active disulfide protein 2 | HMPREF1534_03221 | Not Available | Positive | 3678474 - 3678704 | 8197.36 |
| hypothetical protein | HMPREF1534_03222 | Not Available | Positive | 3678716 - 3679120 | 15669.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


