Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit c/d | HMPREF1534_03183 | Not Available | Negative | 3624025 - 3625581 | 59279.2 |
| nadh-quinone oxidoreductase subunit b | HMPREF1534_03184 | Not Available | Negative | 3625585 - 3626172 | 21858.8 |
| nadh-quinone oxidoreductase subunit a | HMPREF1534_03185 | Not Available | Negative | 3626163 - 3626513 | 13039.4 |
| hypothetical protein | HMPREF1534_03186 | Not Available | Negative | 3626624 - 3627013 | 14938.0 |
| trkh family potassium uptake protein | HMPREF1534_03187 | Not Available | Negative | 3627123 - 3628577 | 53413.4 |
| hypothetical protein | HMPREF1534_03188 | Not Available | Negative | 3628577 - 3629917 | 49282.4 |
| 1-deoxy-d-xylulose-5-phosphate synthase | HMPREF1534_03189 | Not Available | Negative | 3629933 - 3631867 | 71822.0 |
| hypothetical protein | HMPREF1534_03190 | Not Available | Positive | 3631924 - 3632910 | 38560.5 |
| alanine racemase | HMPREF1534_03191 | Not Available | Positive | 3632886 - 3635351 | 92649.5 |
| hypothetical protein | HMPREF1534_03192 | Not Available | Positive | 3635438 - 3636001 | 21520.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


