Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola massiliensis, designated as B84634, Timone 84634, DSM 17679, and JCM, is a Gram-negative bacterium primarily found in the gut of Homo sapiens. This species is characterized by the presence of flagella, which are likely involved in its motility within the gastrointestinal tract. Notably, P. massiliensis possesses a single replicon, indicating a streamlined genomic organization. As a member of the gut microbiota, P. massiliensis may play a role in the complex ecosystem of the human digestive system. The gut microbiome is essential for various functions, including digestion, nutrient absorption, and the modulation of the immune response. The presence of P. massiliensis suggests it may contribute to the overall balance of microbial communities within the host, although specific functional roles have not been detailed in the provided traits. The accession number AQHY00000000.1 corresponds to its genomic sequence, facilitating further research into its genetic makeup and potential functions. Understanding the ecological role of P. massiliensis in the human gut may offer insights into its contributions to health or disease states, particularly as research continues to elucidate the relationships between gut microbiota and host well-being.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola massiliensis
StrainB84634 = Timone 84634 = DSM 17679 = JCM

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM


Gene Summary

Adenine Count

1304608 bp

Thymine Count

1311189 bp

Guanine Count

968725 bp

Cytosine Count

980062 bp

Genome Length

4564584 bp

Protein-coding Genes

3935 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh-quinone oxidoreductase subunit c/dHMPREF1534_03183Not AvailableNegative3624025 - 362558159279.2
nadh-quinone oxidoreductase subunit bHMPREF1534_03184Not AvailableNegative3625585 - 362617221858.8
nadh-quinone oxidoreductase subunit aHMPREF1534_03185Not AvailableNegative3626163 - 362651313039.4
hypothetical proteinHMPREF1534_03186Not AvailableNegative3626624 - 362701314938.0
trkh family potassium uptake proteinHMPREF1534_03187Not AvailableNegative3627123 - 362857753413.4
hypothetical proteinHMPREF1534_03188Not AvailableNegative3628577 - 362991749282.4
1-deoxy-d-xylulose-5-phosphate synthaseHMPREF1534_03189Not AvailableNegative3629933 - 363186771822.0
hypothetical proteinHMPREF1534_03190Not AvailablePositive3631924 - 363291038560.5
alanine racemaseHMPREF1534_03191Not AvailablePositive3632886 - 363535192649.5
hypothetical proteinHMPREF1534_03192Not AvailablePositive3635438 - 363600121520.1

Displaying genes 3181 – 3190 of 4012 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

496 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da

Displaying 1–10 of 496 metabolites

Health Effects

No health effects information available for this bacterium.