Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00257 | Not Available | Positive | 325274 - 326254 | 35323.1 |
| hypothetical protein | HMPREF1534_00258 | Not Available | Negative | 326453 - 327694 | 47481.2 |
| hypothetical protein | HMPREF1534_00259 | Not Available | Negative | 327823 - 329442 | 63865.9 |
| 2',3'-cyclic-nucleotide 2'-phosphodiesterase | HMPREF1534_00260 | Not Available | Negative | 329524 - 331059 | 57271.6 |
| hypothetical protein | HMPREF1534_00261 | Not Available | Negative | 331162 - 331455 | 11677.9 |
| hypothetical protein | HMPREF1534_00262 | Not Available | Negative | 331484 - 331780 | 11690.2 |
| queuosine biosynthesis protein qued | HMPREF1534_00263 | Not Available | Positive | 332414 - 332746 | 12796.2 |
| hypothetical protein | HMPREF1534_00264 | Not Available | Positive | 332733 - 333278 | 20320.5 |
| Trna-trp | Not Available | Not Available | Positive | 333841 - 333916 | Not Available |
| hypothetical protein | HMPREF1534_00266 | Not Available | Negative | 333984 - 334577 | 22736.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


