Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna dimethylallyltransferase 1 | HMPREF1534_00237 | Not Available | - | 299760 - 300662 | 35047.2 |
| hypothetical protein | HMPREF1534_00238 | Not Available | - | 300714 - 301274 | 21433.4 |
| acyl-[acyl-carrier-protein]-udp-n- acetylglucosamine o-acyltransferase | HMPREF1534_00239 | Not Available | - | 301329 - 302096 | 27666.4 |
| bifunctional enzyme lpxc/fabz | HMPREF1534_00240 | Not Available | - | 302105 - 303490 | 51174.2 |
| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase | HMPREF1534_00241 | Not Available | - | 303496 - 304536 | 36969.6 |
| hypothetical protein | HMPREF1534_00242 | Not Available | - | 304670 - 305905 | 47141.8 |
| orotidine 5'-phosphate decarboxylase | HMPREF1534_00243 | Not Available | - | 305905 - 306729 | 30802.8 |
| peptide chain release factor 1 | HMPREF1534_00244 | Not Available | - | 306755 - 307867 | 41872.5 |
| hypothetical protein | HMPREF1534_00245 | Not Available | - | 307874 - 308113 | 8956.29 |
| hypothetical protein | HMPREF1534_00246 | Not Available | - | 308187 - 309335 | 41938.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.


