Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| acyl-[acyl-carrier-protein]-udp-n- acetylglucosamine o-acyltransferase | HMPREF1534_00156 | Not Available | + | 189742 - 190509 | 27640.1 |
| hypothetical protein | HMPREF1534_00157 | Not Available | + | 190535 - 191191 | 25510.0 |
| hypothetical protein | HMPREF1534_00158 | Not Available | + | 191230 - 192552 | 49482.7 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_00159 | Not Available | + | 192579 - 193610 | 37841.2 |
| hydrophobe/amphiphile efflux-1 (hae1) family rnd transporter | HMPREF1534_00160 | Not Available | + | 193628 - 196798 | 115566.0 |
| hypothetical protein | HMPREF1534_00161 | Not Available | + | 196816 - 197109 | 11124.3 |
| hypothetical protein | HMPREF1534_00162 | Not Available | + | 197575 - 198942 | 50978.9 |
| hypothetical protein | HMPREF1534_00163 | Not Available | + | 198929 - 199894 | 36114.8 |
| hypothetical protein | HMPREF1534_00164 | Not Available | + | 199872 - 201353 | 57290.6 |
| marc family membrane protein | HMPREF1534_00166 | Not Available | - | 203259 - 203903 | 23851.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.


