Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00146 | Not Available | + | 172278 - 175235 | 113133.0 |
| hypothetical protein | HMPREF1534_00147 | Not Available | + | 175344 - 176564 | 43933.0 |
| hypothetical protein | HMPREF1534_00148 | Not Available | + | 176642 - 177112 | 16558.9 |
| hypothetical protein | HMPREF1534_00149 | Not Available | - | 177226 - 178002 | 29405.2 |
| hypothetical protein | HMPREF1534_00150 | Not Available | - | 178020 - 179147 | 41595.6 |
| glutamate dehydrogenase | HMPREF1534_00151 | Not Available | - | 179351 - 180685 | 49083.9 |
| hypothetical protein | HMPREF1534_00152 | Not Available | - | 181148 - 183439 | 84302.4 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_00153 | Not Available | + | 183839 - 185050 | 43534.2 |
| hydrophobe/amphiphile efflux-1 (hae1) family rnd transporter | HMPREF1534_00154 | Not Available | + | 185103 - 188321 | 116955.0 |
| nodt family efflux transporter, outer membrane factor (omf) lipoprotein | HMPREF1534_00155 | Not Available | + | 188333 - 189718 | 50317.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.


