Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (uracil-5-)-methyltransferase ruma | HMPREF1534_01226 | Not Available | Positive | 1400810 - 1402228 | 54019.9 |
| rlua family pseudouridine synthase | HMPREF1534_01227 | Not Available | Positive | 1402231 - 1403157 | 35598.0 |
| cof-like hydrolase | HMPREF1534_01228 | Not Available | Negative | 1403179 - 1403994 | 30459.2 |
| hypothetical protein | HMPREF1534_01229 | Not Available | Positive | 1404074 - 1405306 | 47019.2 |
| hypothetical protein | HMPREF1534_01230 | Not Available | Positive | 1405338 - 1406000 | 24280.9 |
| hypothetical protein | HMPREF1534_01231 | Not Available | Negative | 1406111 - 1407577 | 55079.0 |
| hypothetical protein | HMPREF1534_01232 | Not Available | Negative | 1407589 - 1408713 | 42713.1 |
| hypothetical protein | HMPREF1534_01233 | Not Available | Negative | 1408902 - 1409615 | 28286.8 |
| hypothetical protein | HMPREF1534_01234 | Not Available | Positive | 1409794 - 1410348 | 21566.7 |
| hypothetical protein | HMPREF1534_01235 | Not Available | Negative | 1410447 - 1411244 | 30164.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


