Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01196 | Not Available | Positive | 1372522 - 1373142 | 23904.9 |
| hypothetical protein | HMPREF1534_01197 | Not Available | Positive | 1373249 - 1373953 | 25525.1 |
| arsenate reductase (thioredoxin) | HMPREF1534_01198 | Not Available | Positive | 1373950 - 1374375 | 16088.2 |
| hypothetical protein | HMPREF1534_01199 | Not Available | Positive | 1374391 - 1374813 | 16181.4 |
| hypothetical protein | HMPREF1534_01200 | Not Available | Positive | 1374813 - 1375280 | 17115.8 |
| methylated-dna-[protein]-cysteine s-methyltransferase | HMPREF1534_01201 | Not Available | Positive | 1375291 - 1375803 | 19089.2 |
| hypothetical protein | HMPREF1534_01202 | Not Available | Negative | 1375813 - 1376526 | 26195.7 |
| hypothetical protein | HMPREF1534_01203 | Not Available | Negative | 1376539 - 1378875 | 88302.4 |
| hypothetical protein | HMPREF1534_01204 | Not Available | Negative | 1378910 - 1379383 | 18045.0 |
| conjugative transposon tran protein | HMPREF1534_01205 | Not Available | Negative | 1379396 - 1380268 | 33397.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


