Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01136 | Not Available | Positive | 1318151 - 1318474 | 12723.3 |
| hypothetical protein | HMPREF1534_01137 | Not Available | Positive | 1318701 - 1318904 | 7862.61 |
| dna primase | HMPREF1534_01138 | Not Available | Positive | 1318901 - 1322191 | 125710.0 |
| hypothetical protein | HMPREF1534_01139 | Not Available | Positive | 1322330 - 1323901 | 61224.0 |
| hypothetical protein | HMPREF1534_01140 | Not Available | Negative | 1323988 - 1324395 | 15101.7 |
| transposase for insertion sequence element | HMPREF1534_01141 | Not Available | Positive | 1325707 - 1326687 | 37996.3 |
| rrna adenine n-6-methyltransferase | HMPREF1534_01142 | Not Available | Positive | 1326712 - 1326909 | 7347.94 |
| hypothetical protein | HMPREF1534_01143 | Not Available | Positive | 1326921 - 1327289 | 14084.1 |
| hypothetical protein | HMPREF1534_01144 | Not Available | Positive | 1327291 - 1327635 | 13555.6 |
| hypothetical protein | HMPREF1534_01145 | Not Available | Positive | 1327724 - 1329505 | 68575.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


