Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01006 | Not Available | Positive | 1181636 - 1181851 | 7835.45 |
| hypothetical protein | HMPREF1534_01007 | Not Available | Negative | 1182019 - 1182372 | 13334.4 |
| hypothetical protein | HMPREF1534_01008 | Not Available | Negative | 1182397 - 1183284 | 32767.6 |
| hypothetical protein | HMPREF1534_01009 | Not Available | Positive | 1183337 - 1183546 | 8281.2 |
| hypothetical protein | HMPREF1534_01010 | Not Available | Positive | 1183566 - 1183739 | 6494.62 |
| hypothetical protein | HMPREF1534_01011 | Not Available | Positive | 1183758 - 1184054 | 11482.8 |
| aspartyl-trna synthetase | HMPREF1534_01012 | Not Available | Positive | 1184188 - 1185945 | 66412.8 |
| hypothetical protein | HMPREF1534_01013 | Not Available | Negative | 1186141 - 1186731 | 21461.4 |
| hypothetical protein | HMPREF1534_01014 | Not Available | Negative | 1186867 - 1187820 | 35757.5 |
| hypothetical protein | HMPREF1534_01015 | Not Available | Negative | 1187771 - 1188802 | 39592.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


