Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00996 | Not Available | Negative | 1167036 - 1169324 | 86724.5 |
| hypothetical protein | HMPREF1534_00997 | Not Available | Negative | 1169339 - 1171738 | 90673.6 |
| hypothetical protein | HMPREF1534_00998 | Not Available | Negative | 1171758 - 1174151 | 91869.6 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_00999 | Not Available | Negative | 1174163 - 1175413 | 47888.9 |
| hypothetical protein | HMPREF1534_01000 | Not Available | Negative | 1175469 - 1176977 | 57856.7 |
| hypothetical protein | HMPREF1534_01001 | Not Available | Positive | 1177142 - 1178509 | 51841.9 |
| hypothetical protein | HMPREF1534_01002 | Not Available | Positive | 1178506 - 1179831 | 50107.5 |
| Trna-pro | Not Available | Not Available | Positive | 1179990 - 1180064 | Not Available |
| hypothetical protein | HMPREF1534_01004 | Not Available | Negative | 1180201 - 1181136 | 36298.6 |
| hypothetical protein | HMPREF1534_01005 | Not Available | Negative | 1181165 - 1181548 | 14638.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


