Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00986 | Not Available | Negative | 1152088 - 1153257 | 45088.7 |
| queuine trna-ribosyltransferase | HMPREF1534_00987 | Not Available | Negative | 1153268 - 1154398 | 42671.7 |
| atp-dependent protease la | HMPREF1534_00988 | Not Available | Negative | 1154400 - 1156880 | 92964.4 |
| hypothetical protein | HMPREF1534_00989 | Not Available | Positive | 1157069 - 1157773 | 26333.8 |
| yegs//bmru family lipid kinase | HMPREF1534_00990 | Not Available | Negative | 1157775 - 1158809 | 38219.3 |
| 8-amino-7-oxononanoate synthase | HMPREF1534_00991 | Not Available | Positive | 1159059 - 1160246 | 44054.7 |
| hypothetical protein | HMPREF1534_00992 | Not Available | Positive | 1160351 - 1161430 | 38782.5 |
| hypothetical protein | HMPREF1534_00993 | Not Available | Negative | 1161451 - 1163793 | 89385.0 |
| hypothetical protein | HMPREF1534_00994 | Not Available | Negative | 1163963 - 1164640 | 24981.2 |
| hypothetical protein | HMPREF1534_00995 | Not Available | Negative | 1164666 - 1166876 | 84451.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


