Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_00001 | Not Available | + | 1 - 2739 | 101582.0 |
| 16s ribosomal rna | Not Available | Not Available | + | 339 - 1856 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | + | 747 - 856 | Not Available |
| hypothetical protein | HMPREF1534_00002 | Not Available | + | 2751 - 4214 | 55890.4 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_00003 | Not Available | + | 4508 - 7477 | 109915.0 |
| hypothetical protein | HMPREF1534_00004 | Not Available | + | 7499 - 9100 | 60526.9 |
| hypothetical protein | HMPREF1534_00005 | Not Available | + | 9131 - 10975 | 68250.6 |
| hypothetical protein | HMPREF1534_00006 | Not Available | + | 11058 - 13955 | 110173.0 |
| gtp-binding protein hflx | HMPREF1534_00007 | Not Available | + | 14081 - 15346 | 48048.0 |
| hypothetical protein | HMPREF1534_00008 | Not Available | + | 15396 - 16616 | 46195.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.


