Helicobacter pylori NQ4161

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori NQ4161 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat. H. pylori is known to inhabit the gastric mucosa of humans, where it can interact with the host's immune system and gastric environment. As a microaerophilic organism, H. pylori requires reduced levels of oxygen for growth, which is consistent with its colonization of the anaerobic environment found within the stomach. The unique shape of H. pylori, combined with its motility, allows it to navigate through the viscous mucus layer of the gastric epithelium, facilitating its survival and establishment in a nutrient-restricted niche. The ability of H. pylori to persist in the harsh gastric environment and its specific growth requirements highlight its specialized adaptation to host-associated habitats. This specialization may play a role in its potential interactions with the host microbiome, influencing gastric health and disease outcomes. Understanding these traits provides insight into the ecological dynamics of H. pylori within the human stomach and its potential impact on gastrointestinal health.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNQ4161

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori NQ4161
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pylori NQ4161


Gene Summary

Adenine Count

498810 bp

Thymine Count

503311 bp

Guanine Count

318473 bp

Cytosine Count

322623 bp

Genome Length

1643218 bp

Protein-coding Genes

1678 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+61 - 174Not Available
hypothetical proteinHPNQ4161_0001Not Available+77 - 40912988.9
23s ribosomal rnaNot AvailableNot Available+416 - 3299Not Available
hypothetical proteinHPNQ4161_0002Not Available+547 - 7989575.51
hypothetical proteinHPNQ4161_0003Not Available+770 - 157330880.4
integrase/recombinase xerdHPNQ4161_0004Not Available-1890 - 295742087.8
putative membrane proteinHPNQ4161_0005Not Available+3941 - 40544405.65
relaxase domain proteinHPNQ4161_0006Not Available-4109 - 42495248.07
relaxaseHPNQ4161_0007Not Available-4432 - 619569865.6
hypothetical proteinHPNQ4161_0008Not Available+6928 - 71136727.84

Displaying genes 1 – 10 of 1722 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

92 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 92 metabolites