Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter, outer membrane factor lipoprotein, nodt family | PMI12_00034 | Not Available | - | 30603 - 32108 | 52494.1 |
| heavy metal efflux pump, cobalt-zinc-cadmium | PMI12_00035 | Not Available | - | 32125 - 35220 | 111923.0 |
| rnd family efflux transporter, mfp subunit | PMI12_00036 | Not Available | - | 35213 - 36367 | 39918.0 |
| response regulator with chey-like receiver domain and winged-helix dna-binding domain | PMI12_00037 | Not Available | + | 36541 - 37257 | 26349.2 |
| signal transduction histidine kinase | PMI12_00038 | Not Available | + | 37250 - 38671 | 50509.9 |
| hypothetical protein | PMI12_00039 | Not Available | + | 38750 - 39730 | 34428.6 |
| hypothetical protein | PMI12_00040 | Not Available | - | 39748 - 40134 | 13429.6 |
| protein of unknown function (duf3540) | PMI12_00041 | Not Available | - | 40158 - 40904 | 26334.4 |
| putative low-complexity protein | PMI12_00042 | Not Available | - | 40901 - 42019 | 41183.3 |
| Ncrna_class:srp_rna | Not Available | Not Available | + | 43071 - 43170 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.