Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| agmatinase | PMI12_00124 | Not Available | - | 131408 - 132406 | 35275.4 |
| abc-type spermidine/putrescine transport system, permease component ii | PMI12_00125 | Not Available | - | 132382 - 133200 | 29369.6 |
| abc-type spermidine/putrescine transport system, permease component i | PMI12_00126 | Not Available | - | 133223 - 134446 | 44447.3 |
| spermidine/putrescine-binding periplasmic protein | PMI12_00127 | Not Available | - | 134501 - 135529 | 37481.8 |
| spermidine/putrescine abc transporter atp-binding subunit | PMI12_00128 | Not Available | - | 135585 - 136679 | 39999.4 |
| 4-aminobutyrate aminotransferase | PMI12_00129 | Not Available | - | 136707 - 137999 | 45261.4 |
| transcriptional regulator with hth domain and aminotransferase domain containing protein | PMI12_00130 | Not Available | + | 138163 - 139575 | 52197.0 |
| putative ornithine cyclodeaminase, mu-crystallin | PMI12_00131 | Not Available | + | 139711 - 140760 | 37920.4 |
| deacetylase, histone deacetylase/acetoin utilization protein | PMI12_00132 | Not Available | + | 140819 - 141808 | 35593.9 |
| hypothetical protein | PMI12_00133 | Not Available | + | 141937 - 142911 | 34725.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.