Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transglutaminase-like enzyme, predicted cysteine protease | PMI12_00782 | Not Available | Positive | 804676 - 805575 | 33285.4 |
| histidine kinase with hamp domain containing protein | PMI12_00783 | Not Available | Negative | 805610 - 807100 | 53918.4 |
| response regulator with chey-like receiver domain and winged-helix dna-binding domain | PMI12_00784 | Not Available | Negative | 807097 - 807822 | 27147.8 |
| thiosulfate reductase cytochrome b subunit (membrane anchoring protein) | PMI12_00785 | Not Available | Positive | 807920 - 808634 | 26545.1 |
| ring-hydroxylating dioxygenase, large terminal subunit | PMI12_00786 | Not Available | Negative | 808687 - 809826 | 43240.0 |
| exodeoxyribonuclease vii, small subunit | PMI12_00787 | Not Available | Positive | 810104 - 810370 | 9389.16 |
| geranylgeranyl pyrophosphate synthase | PMI12_00788 | Not Available | Positive | 810367 - 811287 | 31490.7 |
| 1-deoxy-d-xylulose-5-phosphate synthase | PMI12_00789 | Not Available | Positive | 811309 - 813165 | 66310.8 |
| trap-type mannitol/chloroaromatic compound transport system, periplasmic component | PMI12_00790 | Not Available | Positive | 813276 - 814355 | 39634.3 |
| hypothetical protein | PMI12_00791 | Not Available | Negative | 814518 - 814997 | 17507.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.