Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm domain-containing protein | PMI12_00682 | Not Available | Positive | 706130 - 707347 | 44198.1 |
| dna protecting protein dpra | PMI12_00683 | Not Available | Positive | 707421 - 708527 | 37935.6 |
| hypothetical protein | PMI12_00684 | Not Available | Positive | 708680 - 709198 | 19011.6 |
| protein of unknown function (duf1631) | PMI12_00685 | Not Available | Negative | 709218 - 711596 | 85923.2 |
| protein-export membrane protein, secd/secf family | PMI12_00686 | Not Available | Negative | 711754 - 712707 | 34968.9 |
| protein-export membrane protein, secd/secf family | PMI12_00687 | Not Available | Negative | 712726 - 714609 | 68023.8 |
| preprotein translocase, yajc subunit | PMI12_00688 | Not Available | Negative | 714689 - 715024 | 11682.7 |
| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit | PMI12_00689 | Not Available | Negative | 715309 - 718920 | 131442.0 |
| transcriptional regulator | PMI12_00690 | Not Available | Positive | 719097 - 719573 | 17509.0 |
| periplasmic component of amino acid abc-type transporter/signal transduction system | PMI12_00691 | Not Available | Positive | 719664 - 720422 | 27011.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.