Vibrio rumoiensis 1S-45

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio rumoiensis
Strain1S-45

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio rumoiensis 1S-45
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio rumoiensis 1S-45

AJYK00000000.2

Gene Summary

Adenine Count

1014796 bp

Thymine Count

1014491 bp

Guanine Count

713406 bp

Cytosine Count

704703 bp

Genome Length

3447496 bp

Protein-coding Genes

2981 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
lipid a biosynthesis lauroyl acyltransferaseA1QC_04260P0ACV1-425502 - 42647637530.7
nucleoid occlusion factor slmaA1QC_04265B7VHK0-426620 - 42721022625.4
deoxyuridine 5'-triphosphate nucleotidohydrolaseA1QC_04270A4W509-427272 - 42773016320.5
phosphopantothenoylcysteine decarboxylaseA1QC_04275Q87T89-427783 - 42901543884.9
hypothetical proteinA1QC_04280Q87T86+429384 - 43005825116.3
50s ribosomal protein l28A1QC_04285B7VHK3+430631 - 4308679030.12
50s ribosomal protein l33A1QC_04290Q6LVN2+430882 - 4310496409.96
dna-formamidopyrimidine glycosylaseA1QC_04295B7VHK6+431489 - 43231331018.5
pantetheine-phosphate adenylyltransferaseA1QC_04300Q5E8L9-432443 - 43293418327.3
glycosyl transferaseA1QC_04305Q4H4F8-432931 - 43398939581.1

Displaying genes 351 – 360 of 362 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

33 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 33 metabolites