Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia broomeae |
| Strain | ATCC 49717 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1015315 bp
Thymine Count
1018355 bp
Guanine Count
1613308 bp
Cytosine Count
1613020 bp
Genome Length
5259998 bp
Protein-coding Genes
5042 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tat (twin-arginine translocation) pathway signal sequence | HMPREF9695_02650 | Not Available | + | 2802974 - 2804008 | 36928.0 |
| phosphoribosylformylglycinamidine synthase, purs protein | HMPREF9695_02651 | Not Available | - | 2804072 - 2804311 | 8292.12 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase a | HMPREF9695_02652 | Not Available | - | 2804317 - 2805114 | 30360.8 |
| hypothetical protein | HMPREF9695_02653 | Not Available | + | 2805377 - 2805694 | 11479.6 |
| hypothetical protein | HMPREF9695_02654 | Not Available | - | 2805811 - 2806302 | 16792.4 |
| rna methyltransferase, trmh family, group 1 | HMPREF9695_02655 | Not Available | - | 2806412 - 2807605 | 43751.5 |
| hypothetical protein | HMPREF9695_02656 | Not Available | + | 2807781 - 2808947 | 40814.5 |
| drug:h+ antiporter-2 (14 spanner) (dha2) family drug resistance mfs transporter | HMPREF9695_02657 | Not Available | + | 2808934 - 2810517 | 57123.9 |
| isocitrate dehydrogenase | HMPREF9695_02658 | Not Available | + | 2811061 - 2812281 | 45341.5 |
| ybgc/ybaw family acyl-coa thioester hydrolase | HMPREF9695_02659 | Not Available | + | 2812373 - 2812810 | 16739.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
