Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia broomeae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Afipia broomeae ATCC 49717
Accession NumberAGWX00000000.1
Gene Summary
Adenine Count
1015315 bp
Thymine Count
1018355 bp
Guanine Count
1613308 bp
Cytosine Count
1613020 bp
Genome Length
5259998 bp
Protein-coding Genes
5042 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| squalene-hopene cyclase | HMPREF9695_01041 | Not Available | + | 1124027 - 1126009 | 73397.9 |
| hopanoid-associated phosphorylase | HMPREF9695_01042 | Not Available | + | 1126006 - 1126698 | 24156.4 |
| hopanoid biosynthesis associated radical sam protein hpnh | HMPREF9695_01043 | Not Available | - | 1126784 - 1127974 | 43824.9 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 | HMPREF9695_01044 | Not Available | - | 1127981 - 1128952 | 35064.1 |
| 1-deoxy-d-xylulose-5-phosphate synthase | HMPREF9695_01045 | Not Available | - | 1128963 - 1130879 | 67554.1 |
| hopanoid biosynthesis associated rnd transporter like protein hpnn | HMPREF9695_01046 | Not Available | + | 1131156 - 1133687 | 89684.3 |
| hypothetical protein | HMPREF9695_01047 | Not Available | - | 1133700 - 1134329 | 21591.9 |
| hypothetical protein | HMPREF9695_01048 | Not Available | + | 1134444 - 1135844 | 50993.7 |
| hypothetical protein | HMPREF9695_01049 | Not Available | - | 1135917 - 1136159 | 8434.29 |
| trap transporter, 4tm/12tm fusion protein | HMPREF9695_01050 | Not Available | - | 1136350 - 1138458 | 75037.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
