Succinatimonas hippei YIT 12066

rodanaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Aeromonadales

Family

Succinivibrionaceae

Genus

Succinatimonas

Description

Succinatimonas hippei YIT 12066 is a Gram-negative, non-spore-forming rod-shaped bacterium that demonstrates an anaerobic lifestyle, thriving optimally at a temperature of 37.0°C. This organism's Gram-negative status indicates a complex cell wall structure that may contribute to its environmental adaptability and metabolic processes under anaerobic conditions. The rod shape of Succinatimonas hippei suggests a potential role in biofilm formation or as a part of microbial consortia, which are common in various anaerobic environments. Its inability to form spores may imply a reliance on specific environmental conditions for survival and growth, thus limiting its ecological niches primarily to environments where favorable conditions are consistently present. The optimal growth temperature of 37.0°C aligns with the physiological conditions found in many warm-blooded hosts, hinting at a possible association with such environments, though caution must be exercised in speculating on ecological roles without further evidence. Overall, the traits of Succinatimonas hippei YIT 12066 suggest that it may play a significant role in anaerobic biogeochemical cycles, potentially contributing to processes such as succinate production or fermentation, which are critical in microbial ecology and may have implications for understanding metabolic pathways in anaerobic communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAeromonadales
FamilySuccinivibrionaceae
GenusSuccinatimonas
SpeciesSuccinatimonas hippei
StrainYIT 12066

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Succinatimonas hippei YIT 12066


Gene Summary

Adenine Count

685450 bp

Thymine Count

691751 bp

Guanine Count

469643 bp

Cytosine Count

459098 bp

Genome Length

2305942 bp

Protein-coding Genes

2169 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+62 - 1567Not Available
5s ribosomal rnaNot AvailableNot Available+105 - 219Not Available
23s ribosomal rnaNot AvailableNot Available+182 - 3053Not Available
Trna-thrNot AvailableNot Available+206 - 281Not Available
hypothetical proteinHMPREF9444_00002Not Available+367 - 77715483.2
bacterial transferase hexapeptide repeat proteinHMPREF9444_00003Not Available+783 - 138522104.7
hypothetical proteinHMPREF9444_00004Not Available-1387 - 262847243.2
acetyltransferase, gnat familyHMPREF9444_00005Not Available-2714 - 332223636.8
carbohydrate kinase, fggy family proteinHMPREF9444_00006Not Available-3339 - 491657233.5
Ncrna_class:rnase_p_rnaNot AvailableNot Available+4957 - 5257Not Available

Displaying genes 1 – 10 of 2224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

237 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm00013353-oxo-3-phenylpropanoateC9H7O3Chemical structure of 3-oxo-3-phenylpropanoateNot available
Average163.153Da
Monoisotopic163.0400677Da

Displaying 1–10 of 237 metabolites