Campylobacter upsaliensis JV21

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter upsaliensis JV21 is a Gram-negative bacterium characterized by its spiral or curved rod shape, which is typical of the Campylobacter genus. This microbe is part of a group that is known for its microaerophilic growth requirements, meaning it thrives in environments with lower oxygen concentrations than that of the atmosphere. As a member of the Campylobacter genus, C. upsaliensis JV21 likely possesses motility attributes facilitated by a single polar flagellum, which aids in its movement through viscous environments such as the intestinal tract. This trait is significant for its ecological interactions, particularly in relation to its potential hosts. C. upsaliensis has been studied for its associations with various animal species, which may serve as reservoirs, although specific host interactions for the JV21 strain remain to be elucidated. The organism’s Gram-negative structure suggests the presence of an outer membrane containing lipopolysaccharides, which can play roles in virulence and immune system evasion. Understanding the traits of Campylobacter upsaliensis JV21 contributes to the broader knowledge of Campylobacter species, which are significant in veterinary and public health contexts. Furthermore, the adaptability of C. upsaliensis JV21 to microaerophilic conditions may provide insights into its survival mechanisms in diverse environments, including potential interactions within gut microbiomes. This adaptability underscores the ecological versatility of Campylobacter species and their roles in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter upsaliensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter upsaliensis JV21


Gene Summary

Adenine Count

523291 bp

Thymine Count

534039 bp

Guanine Count

276657 bp

Cytosine Count

287702 bp

Genome Length

1621689 bp

Protein-coding Genes

1705 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
conserved hypothetical proteinHMPREF9400_0007Not Available-3283 - 394525681.6
conserved hypothetical proteinHMPREF9400_0008Not Available+3917 - 419510062.3
50s ribosomal protein l27HMPREF9400_0009Not Available-4230 - 44849267.18
50s ribosomal protein l21HMPREF9400_0010Not Available-4495 - 480311744.5
Ncrna_class:rnase_p_rnaNot AvailableNot Available+5302 - 5574Not Available
periplasmic proteinHMPREF9400_0011Not Available-4910 - 611243548.8
periplasmic proteinHMPREF9400_0012Not Available-6123 - 747250087.2
lipoproteinHMPREF9400_0013Not Available-7523 - 814622580.9
lipoproteinHMPREF9400_0014Not Available-8162 - 853014184.4
lipoproteinHMPREF9400_0015Not Available-8542 - 989450430.4

Displaying genes 11 – 20 of 1751 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

401 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 401 metabolites