Pseudomonas syringae pv. japonica str. M301072

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. japonica str. M301072 is a Gram-negative, rod-shaped bacterium that primarily exists as single cells. This strain is categorized as a heterotrophic organism, utilizing organic compounds as its energy source, which allows it to thrive in diverse habitats. As an aerobic microbe, it requires oxygen for its metabolic processes, positioning it within environments that support aerobic life. The ability of Pseudomonas syringae pv. japonica str. M301072 to adapt to multiple habitats suggests a versatile ecological role, potentially allowing it to exploit various niches in both soil and plant environments. This adaptability may contribute to its interactions with various organic substrates and its potential involvement in nutrient cycling processes within these ecosystems. Understanding the specific environmental conditions and interactions of this strain could provide further insights into its ecological significance and functional roles in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. japonica M301072

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. japonica str. M301072
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. japonica str. M301072


Gene Summary

Adenine Count

1307612 bp

Thymine Count

1312785 bp

Guanine Count

1881602 bp

Cytosine Count

1878619 bp

Genome Length

6380619 bp

Protein-coding Genes

8776 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail fiber proteinPSYJA_01049Not Available-174523 - 1746645009.71
Hypothetical proteinPSYJA_01054Not Available-174693 - 17510914681.3
Hypothetical proteinPSYJA_01059Not Available-175352 - 17573813691.0
Tail fiber proteinPSYJA_01064Not Available-175717 - 179856143736.0
Hypothetical proteinPSYJA_01069Not Available-179856 - 18025414701.4
Hypothetical proteinPSYJA_01074Not Available-180257 - 18085921962.7
Tail proteinPSYJA_01079Not Available-180859 - 18144321532.5
Tail tape measure proteinPSYJA_01084Not Available-181465 - 18374480318.2
Tail tape measure proteinPSYJA_01089Not Available-183674 - 18487041318.8
hypothetical proteinPSYJA_01094Not Available-184892 - 18547020404.4

Displaying genes 1 – 10 of 8853 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

330 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 330 metabolites