Alistipes indistinctus YIT 12060

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes indistinctus YIT 12060 is a Gram-negative, anaerobic bacterium characterized by its inability to survive in the presence of oxygen. This microbe is part of the diverse human gut microbiota, where it plays a role in the complex ecosystem of the gastrointestinal tract. Although specific metabolic pathways and ecological interactions of A. indistinctus are not provided, its classification as an anaerobe suggests that it thrives in oxygen-limited environments typically found in the human intestine. The Gram-negative nature of A. indistinctus indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with other microbial species and host systems. The physiological traits of A. indistinctus underscore its potential contributions to gut health and homeostasis, possibly influencing nutrient absorption and immune responses through its metabolic activities. Moreover, the presence of A. indistinctus within the gut microbiome may provide insights into the maintenance of microbial diversity and the balance of gut flora, which are crucial for preventing dysbiosis and promoting overall health. Further research into the specific roles and interactions of A. indistinctus in the gut microbiome could shed light on its importance in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes indistinctus
StrainYIT 12060

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes indistinctus YIT 12060


Gene Summary

Adenine Count

625577 bp

Thymine Count

664355 bp

Guanine Count

808831 bp

Cytosine Count

752215 bp

Genome Length

2850978 bp

Protein-coding Genes

2348 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHMPREF9450_00001Not Available+1 - 91733435.0
16s ribosomal rnaNot AvailableNot Available+328 - 1844Not Available
23s ribosomal rnaNot AvailableNot Available+584 - 3451Not Available
hypothetical proteinHMPREF9450_00002Not Available+914 - 11689818.89
hypothetical proteinHMPREF9450_00003Not Available+1165 - 13707475.78
hypothetical proteinHMPREF9450_00004Not Available+1371 - 193321189.9
hypothetical proteinHMPREF9450_00005Not Available+1966 - 20703759.49
hypothetical proteinHMPREF9450_00006Not Available+2080 - 307539998.1
hypothetical proteinHMPREF9450_00007Not Available+3060 - 458054352.1
5s ribosomal rnaNot AvailableNot Available+3547 - 3657Not Available

Displaying genes 1 – 10 of 2395 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

303 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da

Displaying 1–10 of 303 metabolites