Holdemania filiformis DSM 12042

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemania

Description

Holdemania filiformis DSM 12042 is a Gram-positive, anaerobic bacterium characterized by its filamentous morphology. This microbe is part of the diverse microbial community often associated with anaerobic environments, where it thrives without the presence of oxygen. The Gram-positive nature of H. filiformis indicates that it possesses a thick peptidoglycan layer in its cell wall, which is a common feature of many bacteria in this group, contributing to its structural integrity and resilience in varying conditions. As an anaerobe, H. filiformis engages in fermentation or utilizes alternative electron acceptors for energy production, allowing it to inhabit niches that are devoid of oxygen. This metabolic capability is essential for its survival and growth in specific ecological contexts, such as within sediment layers or the gastrointestinal tracts of certain organisms. The filamentous form of H. filiformis may provide advantages in nutrient acquisition and biofilm formation, enabling it to establish itself in competitive microbial communities. Understanding the growth dynamics and interactions of H. filiformis within its natural habitat could shed light on the roles of filamentous anaerobes in nutrient cycling and microbiome stability. Further research into its physiological properties and ecological interactions may reveal significant insights into the functions of anaerobic microorganisms in their respective ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemania
SpeciesHoldemania filiformis
StrainDSM 12042

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemania filiformis DSM 12042


Gene Summary

Adenine Count

954491 bp

Thymine Count

940345 bp

Guanine Count

960613 bp

Cytosine Count

948296 bp

Genome Length

3803745 bp

Protein-coding Genes

4223 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transcriptional regulator, deor familyHOLDEFILI_00001O31713+1 - 72126935.6
5s ribosomal rnaNot AvailableNot Available+2 - 114Not Available
23s ribosomal rnaNot AvailableNot Available+209 - 3104Not Available
Ncrna_class:rnase_p_rnaNot AvailableNot Available+413 - 776Not Available
hypothetical proteinHOLDEFILI_00002Not Available-923 - 238655080.2
16s ribosomal rnaNot AvailableNot Available+3369 - 4627Not Available
diguanylate cyclase (ggdef) domain proteinHOLDEFILI_00003Not Available-2448 - 347639449.6
atpase/histidine kinase/dna gyrase b/hsp90 domain proteinHOLDEFILI_00004P94608+3687 - 523457468.0
response regulator receiver domain proteinHOLDEFILI_00005P21866+5231 - 595026922.6
hypothetical proteinHOLDEFILI_00006Not Available+5950 - 621310335.1

Displaying genes 1 – 10 of 4275 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

427 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 427 metabolites