Citrobacter youngae ATCC 29220

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter youngae ATCC 29220 is a Gram-negative bacterium that belongs to the genus Citrobacter, which is known for its diverse metabolic capabilities and environmental adaptability. This microbe exhibits typical characteristics of the Enterobacteriaceae family, including rod-shaped morphology and motility due to the presence of flagella. As a member of the Citrobacter genus, C. youngae is likely to possess the ability to utilize a variety of carbon sources, an attribute that enhances its survival in diverse environments. While specific pathogenicity data for C. youngae ATCC 29220 are not provided, species within the Citrobacter genus have been implicated in opportunistic infections, highlighting the importance of understanding their metabolic pathways and environmental distributions. The bacterium's Gram-negative cell wall structure, characterized by an outer membrane containing lipopolysaccharides, is crucial for its interactions with the environment and potential host organisms. C. youngae ATCC 29220 may be found in a variety of habitats, including soil and water, where it plays a role in nutrient cycling. Its metabolic versatility suggests that it could contribute to the degradation of organic compounds, thus influencing the ecological dynamics of its environment. Understanding the traits of C. youngae ATCC 29220 can enhance our knowledge of microbial ecology and the functional roles of Gram-negative bacteria in environmental systems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter youngae
StrainATCC 29220

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Citrobacter youngae ATCC 29220
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter youngae ATCC 29220


Gene Summary

Adenine Count

1214351 bp

Thymine Count

1222268 bp

Guanine Count

1369428 bp

Cytosine Count

1344212 bp

Genome Length

5150259 bp

Protein-coding Genes

5278 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+24 - 138Not Available
5s ribosomal rnaNot AvailableNot Available+67 - 181Not Available
5s ribosomal rnaNot AvailableNot Available+135 - 249Not Available
5s ribosomal rnaNot AvailableNot Available+167 - 281Not Available
hypothetical proteinCIT292_05900Not Available-34 - 2045968.04
hypothetical proteinCIT292_05901Not Available+344 - 4844797.01
5s ribosomal rnaNot AvailableNot Available+379 - 493Not Available
hypothetical proteinCIT292_05902Not Available+487 - 6726656.96
alpha-ketoglutarate permeaseCIT292_05903P0AEX3+808 - 210646794.0
hypothetical proteinCIT292_05904P46126-2103 - 243812105.2

Displaying genes 1 – 10 of 5407 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

792 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 792 metabolites