[Clostridium] scindens ATCC 35704

Rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Lachnoclostridium

Description

Clostridium scindens ATCC 35704 is a Gram-positive, rod-shaped bacterium that typically occurs in chains or as single cells. This organism is strictly anaerobic, thriving in environments devoid of oxygen, which aligns with its natural habitat found predominantly in fecal matter. C. scindens is part of the diverse microbiota that inhabits the gastrointestinal tract of various animals, playing a significant role in the fermentation of dietary fibers and the metabolism of complex carbohydrates. Its anaerobic nature suggests that it contributes to the unique biochemical processes occurring in the gut environment, where oxygen levels are minimal. The presence of C. scindens in feces indicates its potential involvement in the degradation of organic matter, contributing to nutrient cycling within the ecosystem. Moreover, its ability to coexist with other gut microbes may have implications for gut health and microbial community dynamics. This organism, therefore, represents a crucial component of the anaerobic microbial community in the intestines, underscoring the importance of understanding its role in maintaining gut homeostasis and overall digestive health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusLachnoclostridium
Species[Clostridium] scindens
StrainATCC 35704

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatfeces
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementChains, Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Clostridium] scindens ATCC 35704


Gene Summary

Adenine Count

970517 bp

Thymine Count

971450 bp

Guanine Count

839027 bp

Cytosine Count

838911 bp

Genome Length

3619905 bp

Protein-coding Genes

3872 genes

Non-Coding Genes

230 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Trna-glu;Not AvailableNot Available+173519 - 173590Not Available
Putative phage tail proteinCLOSCI_00192Not Available-175267 - 17672454581.9
Hypothetical proteinCLOSCI_00193Not Available-176721 - 17737124164.7
Tmp repeat proteinCLOSCI_00194Not Available-177368 - 180385107206.0
hypothetical proteinCLOSCI_00195Not Available-180459 - 18195557843.7
hypothetical proteinCLOSCI_00196Not Available-182031 - 1821956261.62
Hypothetical proteinCLOSCI_00197Not Available-182192 - 18256614464.4
Major tail proteinCLOSCI_00198Not Available-182563 - 18318022407.7
Putative aminopeptidaseCLOSCI_00199Not Available-183177 - 18349412170.4
Hypothetical proteinCLOSCI_00200Not Available-183487 - 18387013851.3

Displaying genes 21 – 30 of 4102 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

49 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0003070D-methionineC5H11NO2SChemical structure of D-methionine348-67-4
Average149.211Da
Monoisotopic149.0510493Da
BASm0003419trimethylamineC3H9NChemical structure of trimethylamine75-50-3
Average59.1103Da
Monoisotopic59.07349929Da
BASm0006855(R)-lipoateC8H14O2S2Chemical structure of (R)-lipoate1200-22-2
Average206.326Da
Monoisotopic206.0435211Da
BASm0012579N-acetyl-D-glutamateC7H9NO5Not availableNot available
Average187.152Da
Monoisotopic187.049169554Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014035Glycolic acidC2H4O3Chemical structure of Glycolic acid79-14-1
Average76.0514Da
Monoisotopic76.016043994Da
BASm0014036Glyoxylic acidC2H2O3Chemical structure of Glyoxylic acid298-12-4
Average74.0355Da
Monoisotopic74.00039393Da

Displaying 1–10 of 49 metabolites