Thomasclavelia ramosa DSM 1402

Gram-positiveRodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Coprobacillaceae

Genus

Thomasclavelia

Description

Thomasclavelia ramosa DSM 1402 is a Gram-positive, rod-shaped bacterium known for its anaerobic metabolism and ability to sporulate. This species thrives optimally at a temperature of 37.0°C and is classified as a chemoheterotroph, utilizing organic compounds as its energy source. T. ramosa is versatile in its habitat, being found in multiple environments, although specific ecological niches have not been detailed. The sporulating capability of T. ramosa suggests an adaptation to survive unfavorable conditions, which may be indicative of its ecological roles in anaerobic environments. The ability to form spores is a significant trait for microbial survival, allowing the organism to endure periods of nutritional deprivation or other stressors. Given its anaerobic nature, T. ramosa likely plays a role in biogeochemical cycles within its habitats, contributing to organic matter decomposition and nutrient recycling. Further studies may elucidate the specific ecological interactions and contributions of T. ramosa within its environments, particularly in relation to its anaerobic lifestyle and sporulation capabilities. Understanding these dynamics can enhance our knowledge of microbial ecology and the functional roles of anaerobic bacteria in diverse ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyCoprobacillaceae
GenusThomasclavelia
SpeciesThomasclavelia ramosa
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Thomasclavelia ramosa DSM 1402
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Thomasclavelia ramosa DSM 1402

Accession NumberABFX00000000.2

Gene Summary

Adenine Count

1118441 bp

Thymine Count

1101065 bp

Guanine Count

533932 bp

Cytosine Count

481357 bp

Genome Length

3234795 bp

Protein-coding Genes

3140 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinCLORAM_00018Not Available-20241 - 204869102.0
stage v sporulation protein s (spovs)CLORAM_00019P45693-20599 - 208599231.42
putative metallophosphoesteraseCLORAM_00020O31775-20905 - 2167828666.5
ymda/ytgf family proteinCLORAM_00021B1HR37-21720 - 2327657522.2
dna topoisomeraseCLORAM_00022Q73E74+23544 - 2574884168.8
Ncrna_class:rnase_p_rnaNot AvailableNot Available+24624 - 24952Not Available
reca proteinCLORAM_00023A7GRA9-25847 - 2689337738.4
competence/damage-inducible domain protein cinaCLORAM_00024Q03R28-26923 - 2738116584.2
cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseCLORAM_00025P46322-27381 - 2797421784.5
hypothetical proteinCLORAM_00026Not Available-27974 - 2896637774.4

Displaying genes 81 – 90 of 3222 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

136 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00009123-(indol-3-yl)lactateC11H10NO3Chemical structure of 3-(indol-3-yl)lactateNot available
Average204.206Da
Monoisotopic204.0666168Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da

Displaying 1–10 of 136 metabolites