Thomasclavelia ramosa DSM 1402

Gram-positiveRodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Coprobacillaceae

Genus

Thomasclavelia

Description

Thomasclavelia ramosa DSM 1402 is a Gram-positive, rod-shaped bacterium known for its anaerobic metabolism and ability to sporulate. This species thrives optimally at a temperature of 37.0°C and is classified as a chemoheterotroph, utilizing organic compounds as its energy source. T. ramosa is versatile in its habitat, being found in multiple environments, although specific ecological niches have not been detailed. The sporulating capability of T. ramosa suggests an adaptation to survive unfavorable conditions, which may be indicative of its ecological roles in anaerobic environments. The ability to form spores is a significant trait for microbial survival, allowing the organism to endure periods of nutritional deprivation or other stressors. Given its anaerobic nature, T. ramosa likely plays a role in biogeochemical cycles within its habitats, contributing to organic matter decomposition and nutrient recycling. Further studies may elucidate the specific ecological interactions and contributions of T. ramosa within its environments, particularly in relation to its anaerobic lifestyle and sporulation capabilities. Understanding these dynamics can enhance our knowledge of microbial ecology and the functional roles of anaerobic bacteria in diverse ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyCoprobacillaceae
GenusThomasclavelia
SpeciesThomasclavelia ramosa
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Thomasclavelia ramosa DSM 1402
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Thomasclavelia ramosa DSM 1402

Accession NumberABFX00000000.2

Gene Summary

Adenine Count

1118441 bp

Thymine Count

1101065 bp

Guanine Count

533932 bp

Cytosine Count

481357 bp

Genome Length

3234795 bp

Protein-coding Genes

3140 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
di-trans,poly-cis-decaprenylcistransferaseCLORAM_02451O82827+2489482 - 249006322457.1
phosphatidate cytidylyltransferaseCLORAM_02452O31752+2490063 - 249084528817.3
1-deoxy-d-xylulose 5-phosphate reductoisomeraseCLORAM_02453C5D9C1+2490847 - 249199842488.7
rip metalloprotease rsepCLORAM_02454Q8XJR2+2491998 - 249307739058.1
dna polymerase iii, alpha subunit, gram-positive typeCLORAM_02455Q03QS9+2493137 - 2497474164177.0
hypothetical proteinCLORAM_02456Q8EQU5+2497573 - 249804017982.6
transcription termination factor nusaCLORAM_02457P32727+2498053 - 249939950651.0
hypothetical proteinCLORAM_02458P32728+2499403 - 249966910054.6
ribosomal protein l7aeCLORAM_02459P32729+2499662 - 249995810723.1
translation initiation factor if-2CLORAM_02460A4IMD7+2499963 - 250181667168.9

Displaying genes 2511 – 2520 of 3222 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

136 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00009123-(indol-3-yl)lactateC11H10NO3Chemical structure of 3-(indol-3-yl)lactateNot available
Average204.206Da
Monoisotopic204.0666168Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da

Displaying 1–10 of 136 metabolites