Pseudoflavonifractor capillosus ATCC 29799

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Pseudoflavonifractor

Description

Pseudoflavonifractor capillosus ATCC 29799 is a Gram-negative, anaerobic bacterium that has been characterized for its unique metabolic capabilities. As a member of the phylum Firmicutes, this microbe is known for its ability to thrive in oxygen-depleted environments, making it particularly relevant in studies of anaerobic microbiomes. The organism is typically found in the gastrointestinal tract of mammals, where it plays a role in the complex ecosystem of gut microbiota. Pseudoflavonifractor capillosus is noted for its fermentative metabolism, which allows it to utilize various substrates in the absence of oxygen. The capacity for anaerobic growth is a significant trait, as it enables the bacterium to engage in biochemical processes that contribute to the fermentation of dietary fibers and other complex carbohydrates. This metabolic versatility suggests a potential role in the breakdown of polysaccharides that may otherwise be indigestible, thus contributing to the overall efficiency of nutrient absorption in the host. The presence of Pseudoflavonifractor capillosus in the gut microbiome highlights the intricate interactions between host and microbial communities, especially in maintaining gut health and metabolic functions. Understanding the specific roles of such anaerobic bacteria may provide insights into their contributions to digestion and the potential therapeutic applications in managing gastrointestinal disorders.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusPseudoflavonifractor
SpeciesPseudoflavonifractor capillosus
StrainATCC 29799

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoflavonifractor capillosus ATCC 29799


Gene Summary

Adenine Count

867304 bp

Thymine Count

867049 bp

Guanine Count

1248625 bp

Cytosine Count

1258875 bp

Genome Length

4241853 bp

Protein-coding Genes

4833 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Small subunit ribosomal rnaNot AvailableNot Available+22 - 533Not Available
hypothetical proteinBACCAP_00001Not Available-1 - 31311036.3
helicase c-terminal domain proteinBACCAP_00002Not Available+314 - 152844995.0
hypothetical proteinBACCAP_00003Not Available+1653 - 17634278.36
crispr-associated protein cas5, dvulg subtypeBACCAP_00004Q65TW5+1786 - 244825691.9
crispr-associated protein, csd1 familyBACCAP_00005Not Available+2445 - 418164055.5
5s ribosomal rnaNot AvailableNot Available+3403 - 3518Not Available
hypothetical proteinBACCAP_00006D4GQN6+4183 - 507933244.6
crispr-associated protein cas4BACCAP_00007Not Available+5076 - 573824912.0
crispr-associated endonuclease cas1, dvulg subtypeBACCAP_00008Q8KDC4+5735 - 676638707.5

Displaying genes 1 – 10 of 4895 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

620 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 620 metabolites