Phocaeicola salanitronis DSM 18170

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola salanitronis DSM 18170 is a Gram-positive bacterium characterized by its rod-shaped morphology. This microorganism is part of the diverse microbial community found in marine environments, where it contributes to the complex interactions within these ecosystems. Being classified as a member of the genus Phocaeicola, this species is noteworthy for its unique biochemical properties and metabolic capabilities, which allow it to thrive in specific ecological niches. The strain DSM 18170 has been isolated from a marine environment, highlighting its potential role in the degradation of organic matter and nutrient cycling within coastal ecosystems. The Gram-positive nature of Phocaeicola salanitronis indicates a thick peptidoglycan layer in its cell wall, which may confer certain advantages in terms of environmental resilience and stability. The presence of this trait suggests that P. salanitronis could be well-suited to withstand fluctuations in salinity and other physicochemical factors typical of its marine habitat. Overall, the study of Phocaeicola salanitronis DSM 18170 offers valuable insights into the microbial diversity of marine ecosystems and underscores the importance of Gram-positive bacteria in ecological processes such as nutrient recycling and organic matter decomposition. Further investigation into its metabolic pathways may reveal additional roles it plays in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola salanitronis
StrainDSM 18170

Profile

Physiology
Gram staining properties16865
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola salanitronis DSM 18170


Gene Summary

Adenine Count

1847 bp

Thymine Count

1898 bp

Guanine Count

1160 bp

Cytosine Count

1372 bp

Genome Length

6277 bp

Protein-coding Genes

8 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
duf5712 family proteinBACSA_RS18775Not Available-108 - 100734977.9
bfma/btga family mobilization proteinBACSA_RS18780Not Available-1004 - 160622668.3
txe/yoeb family addiction module toxinBACSA_RS18785Not Available-2097 - 236610738.0
prevent-host-death proteinBACSA_RS20910Not Available-2359 - 278716487.6
replication initiation proteinBACSA_RS18795Not Available+3078 - 405838386.5
hypothetical proteinBACSA_RS18800Not Available+4088 - 42887034.55
bfma/btga family mobilization proteinBACSA_RS18805Not Available+4402 - 494420511.5
hypothetical proteinBACSA_RS18810Not Available-5220 - 620637402.3
chromosomal replication initiator protein dnaaBACSA_RS00005Not Available+92 - 150153645.7
Trna-argNot AvailableNot Available+1583 - 1656Not Available

Displaying genes 1 – 10 of 3775 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

315 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 315 metabolites