Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. JR1-6
Accession NumberSHMI00000000.1
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| branched-chain amino acid abc transporter permease | EXZ48_02210 | Not Available | + | 484411 - 485313 | 32282.8 |
| high-affinity branched-chain amino acid abc transporter permease livm | EXZ48_02215 | Not Available | + | 485317 - 486705 | 50295.6 |
| abc transporter atp-binding protein | EXZ48_02220 | Not Available | + | 486705 - 487592 | 32335.1 |
| abc transporter atp-binding protein | EXZ48_02225 | Not Available | + | 487589 - 488314 | 26271.1 |
| hypothetical protein | EXZ48_02230 | Not Available | + | 488421 - 488765 | 13479.5 |
| branched-chain amino acid abc transporter substrate-binding protein | EXZ48_02235 | Not Available | + | 488877 - 489995 | 38847.6 |
| urease accessory protein ured | EXZ48_02240 | Not Available | + | 490185 - 491036 | 30368.8 |
| urease subunit gamma | EXZ48_02245 | Not Available | + | 491135 - 491437 | 11045.6 |
| duf1272 domain-containing protein | EXZ48_02250 | Not Available | + | 491442 - 491696 | 8877.8 |
| urease subunit beta | EXZ48_02255 | Not Available | + | 491707 - 492012 | 10967.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.