Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. JR1-6
Accession NumberSHMI00000000.1
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trap transporter large permease | EXZ48_29450 | Not Available | + | 6108816 - 6110096 | 45492.0 |
| agmatinase | EXZ48_29455 | Not Available | + | 6110124 - 6111107 | 35342.7 |
| 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase | EXZ48_29460 | Not Available | - | 6111322 - 6112089 | 26820.2 |
| 2-oxo-hepta-3-ene-1,7-dioate hydratase | EXZ48_29465 | Not Available | - | 6112097 - 6112879 | 28221.1 |
| 2-hydroxymuconic semialdehyde dehydrogenase | EXZ48_29470 | Not Available | - | 6112894 - 6114348 | 51627.6 |
| class ii aldolase/adducin family protein | EXZ48_29475 | Not Available | - | 6114377 - 6115054 | 23722.8 |
| glyoxalase/bleomycin resistance/extradiol dioxygenase family protein | EXZ48_29480 | Not Available | - | 6115059 - 6115916 | 32228.5 |
| oxidoreductase | EXZ48_29485 | Not Available | - | 6115913 - 6116773 | 31433.8 |
| trap transporter substrate-binding protein | EXZ48_29490 | Not Available | - | 6116831 - 6117802 | 34953.2 |
| hydrogenase | EXZ48_29495 | Not Available | - | 6117799 - 6118752 | 33772.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.