Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. JR1-6
Accession NumberSHMI00000000.1
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna ligase d | EXZ48_28915 | Not Available | - | 5999106 - 6001649 | 93805.2 |
| ku protein | EXZ48_28920 | Not Available | - | 6001652 - 6002503 | 31629.8 |
| phospholipase | EXZ48_28925 | Not Available | + | 6002533 - 6004212 | 61386.8 |
| upf0104 family protein | EXZ48_28930 | Not Available | - | 6004110 - 6005042 | 32363.2 |
| endonuclease/exonuclease/phosphatase family protein | EXZ48_28935 | Not Available | + | 6005128 - 6005853 | 26431.9 |
| dna-3-methyladenine glycosylase | EXZ48_28945 | Not Available | + | 6006567 - 6007109 | 19497.4 |
| sensor histidine kinase | EXZ48_28950 | Not Available | - | 6007119 - 6008657 | 56344.7 |
| pas domain-containing sensor histidine kinase | EXZ48_28955 | Not Available | - | 6008755 - 6010704 | 72056.0 |
| duf2934 domain-containing protein | EXZ48_28960 | Not Available | + | 6010969 - 6011256 | 10535.5 |
| hypothetical protein | EXZ48_28965 | Not Available | + | 6011406 - 6011669 | 9546.36 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.