Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. JR1-6
Accession NumberSHMI00000000.1
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glucose/quinate/shikimate family membrane-bound pqq-dependent dehydrogenase | EXZ48_05680 | Not Available | - | 1216372 - 1218705 | 83334.7 |
| ydiu family protein | EXZ48_05685 | Not Available | - | 1219078 - 1220589 | 54580.6 |
| hypothetical protein | EXZ48_05690 | Not Available | + | 1220749 - 1221228 | 16376.7 |
| caspase family protein | EXZ48_05695 | Not Available | + | 1221322 - 1223451 | 78709.2 |
| s9 family peptidase | EXZ48_05700 | Not Available | - | 1223653 - 1225746 | 77698.5 |
| yeee/yede family protein | EXZ48_05705 | Not Available | - | 1225815 - 1226249 | 14997.8 |
| yeee/yede family protein | EXZ48_05710 | Not Available | - | 1226246 - 1226656 | 13433.0 |
| transcriptional regulator | EXZ48_05715 | Not Available | - | 1226653 - 1226961 | 11292.8 |
| ai-2e family transporter | EXZ48_05720 | Not Available | - | 1227095 - 1228222 | 40210.9 |
| duf930 domain-containing protein | EXZ48_05725 | Not Available | + | 1228359 - 1228796 | 16153.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.