Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. JR1-6 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. JR1-6
Accession NumberSHMI00000000.1
Gene Summary
Adenine Count
1276357 bp
Thymine Count
1306171 bp
Guanine Count
2269642 bp
Cytosine Count
2240299 bp
Genome Length
7093386 bp
Protein-coding Genes
6605 genes
Non-Coding Genes
160 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter substrate-binding protein | EXZ48_04815 | Not Available | + | 1045463 - 1046779 | 47421.3 |
| sugar abc transporter permease | EXZ48_04820 | Not Available | + | 1047097 - 1047993 | 33182.6 |
| carbohydrate abc transporter permease | EXZ48_04825 | Not Available | + | 1047999 - 1048865 | 31234.8 |
| sn-glycerol-3-phosphate abc transporter atp-binding protein ugpc | EXZ48_04830 | Not Available | + | 1048869 - 1049966 | 40399.9 |
| mandelate racemase/muconate lactonizing enzyme family protein | EXZ48_04835 | Not Available | + | 1049968 - 1051086 | 40875.0 |
| l-rhamnose mutarotase | EXZ48_04840 | Not Available | + | 1051090 - 1051419 | 12653.2 |
| gfo/idh/moca family oxidoreductase | EXZ48_04850 | Not Available | + | 1051617 - 1052684 | 38393.1 |
| dehydratase | EXZ48_04855 | Not Available | + | 1052697 - 1053146 | 16735.0 |
| sdr family oxidoreductase | EXZ48_04860 | Not Available | + | 1053166 - 1053900 | 25431.6 |
| l-fuconate dehydratase | EXZ48_04865 | Not Available | + | 1053931 - 1055205 | 46986.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.