Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter paludis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1583836 bp
Thymine Count
1566892 bp
Guanine Count
923446 bp
Cytosine Count
944055 bp
Genome Length
5018229 bp
Protein-coding Genes
4332 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| anti-sigma factor | DF947_00095 | Not Available | + | 16450 - 17559 | 40760.6 |
| susc/raga family tonb-linked outer membrane protein | DF947_00100 | Not Available | + | 17686 - 21015 | 121804.0 |
| ragb/susd family nutrient uptake outer membrane protein | DF947_00105 | Not Available | + | 21027 - 22454 | 52592.0 |
| hypothetical protein | DF947_00110 | Not Available | + | 22479 - 23744 | 46457.9 |
| gnat family n-acetyltransferase | DF947_00115 | Not Available | - | 23894 - 24412 | 18909.9 |
| glyoxalase | DF947_00120 | Not Available | - | 24484 - 24873 | 14513.2 |
| two-component system response regulator | DF947_00125 | Not Available | - | 25081 - 25863 | 29724.9 |
| histidine kinase | DF947_00130 | Not Available | - | 25848 - 29024 | 120497.0 |
| tonb-dependent receptor | DF947_00135 | Not Available | + | 29706 - 32795 | 110767.0 |
| ragb/susd family nutrient uptake outer membrane protein | DF947_00140 | Not Available | + | 32809 - 34272 | 53945.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.