Photorhabdus laumondii subsp. clarkei

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus laumondii subsp. clarkei is a Gram-negative, rod-shaped bacterium that is characterized by its nonsporulating nature and facultative anaerobic metabolism. This subspecies is typically found in a host-associated habitat, which suggests a close relationship with its host organisms. Due to its facultative oxygen requirement, P. laumondii subsp. clarkei can thrive in both aerobic and anaerobic environments, adapting its metabolic processes according to the availability of oxygen. As a member of the genus Photorhabdus, this bacterium is known for its symbiotic relationship with certain nematodes, particularly those in the genus Heterorhabditis. This interaction indicates a potential role in the life cycle of its nematode partners, facilitating nutrient acquisition and possibly contributing to the nematodes' pathogenic effects on insect hosts. The ecological dynamics of P. laumondii subsp. clarkei highlight the intricate relationships between microbes and their hosts, showcasing the potential for mutualism in ecological contexts. Further investigations into its metabolic pathways and interactions could provide insights into its role within host-associated environments and its applications in biological pest control.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus laumondii
Strainsubsp. clarkei

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Photorhabdus laumondii subsp. clarkei
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus laumondii subsp. clarkei


Gene Summary

Adenine Count

1470874 bp

Thymine Count

1465918 bp

Guanine Count

1085228 bp

Cytosine Count

1087366 bp

Genome Length

5109397 bp

Protein-coding Genes

4051 genes

Non-Coding Genes

247 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Baseplate wedge subunitCKY01_05430Not Available-1171339 - 117178516934.3
hypothetical proteinCKY01_05435Not Available-1171798 - 117339958852.4
hypothetical proteinCKY01_05440Not Available-1173396 - 117407924702.4
hypothetical proteinCKY01_05445Not Available-1174066 - 11742607231.76
Putative tail tube protein 2CKY01_05450Not Available-1174257 - 117471517165.7
Putative tail sheath proteinCKY01_05455Not Available-1174751 - 117594144251.0
Putative tail sheath proteinCKY01_05460Not Available-1175996 - 117738749940.2
Putative tail sheath proteinCKY01_05465Not Available-1177399 - 117848139529.2
Putative tail tube protein 2CKY01_05470Not Available-1178657 - 117910616495.4
Baseplate wedge subunitCKY01_05535Not Available-1196167 - 119664317983.4

Displaying genes 1 – 10 of 4298 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites