Pedobacter kyonggii str. K-4-11-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter kyonggii strain K-4-11-1 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain thrives optimally at a temperature of 16.0°C, indicating a preference for cooler environments. The rod shape and aerobic nature of P. kyonggii suggest its adaptation to specific ecological niches, potentially involving soil or freshwater habitats where oxygen levels are sufficient and temperatures are moderate. As a non-spore-forming organism, P. kyonggii may rely on alternative survival strategies in unfavorable conditions, such as the production of protective metabolites or biofilm formation. The specific temperature and oxygen preferences highlight its potential role in biogeochemical cycles in environments where these conditions prevail. Further studies could elucidate the ecological significance of this organism, particularly in nutrient cycling and interactions with other microbial communities in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter kyonggii
StrainK-4-11-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter kyonggii str. K-4-11-1


Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+137 - 248Not Available
5s ribosomal rnaNot AvailableNot Available+174 - 285Not Available
5s ribosomal rnaNot AvailableNot Available+356 - 467Not Available
type i asparaginaseEYS08_00005Not Available-559 - 157837944.7
tatd family deoxyribonucleaseEYS08_00010Not Available-1863 - 263028848.5
excinuclease abc subunit uvraEYS08_00015Not Available-2850 - 5747107950.0
ferredoxin--nadp reductaseEYS08_00020Not Available-6136 - 718240207.2
lytic transglycosylase domain-containing proteinEYS08_00025Not Available-7628 - 841029393.9
pseudouridine synthaseEYS08_00030Not Available+8674 - 1026360618.9
lactonase family proteinEYS08_00035Not Available+10508 - 1161739910.5

Displaying genes 11 – 20 of 5037 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites