Rodentibacter myodis

microaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter myodis is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement. This organism displays a distinct cellular structure typical of Gram-negative bacteria, possessing a thin peptidoglycan layer surrounded by an outer membrane, which is a characteristic feature of this group. The microaerophilic nature of R. myodis indicates that it thrives in environments with reduced oxygen levels, which may influence its metabolic pathways and ecological niches. While specific pathogenicity or ecological roles are not detailed in the available data, the traits of R. myodis suggest potential associations with rodent hosts or similar environments where microaerophilic conditions are prevalent. Such habitats could include the gastrointestinal tracts of rodents or decomposing organic matter, where oxygen levels are limited but not entirely absent. The unique combination of being a Gram-negative and microaerophilic organism positions R. myodis within a specialized ecological framework, potentially allowing it to participate in nutrient cycling or symbiotic relationships within its habitat. Further studies would be beneficial to elucidate its ecological interactions and physiological roles in the environments it inhabits.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter myodis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter myodis

Accession NumberMLHQ00000000.1

Gene Summary

Adenine Count

729520 bp

Thymine Count

726777 bp

Guanine Count

500152 bp

Cytosine Count

509828 bp

Genome Length

2466277 bp

Protein-coding Genes

2140 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
replicative dna helicaseBKL49_05725Not Available-1135637 - 113704352273.3
peptidase tBKL49_05730Not Available-1137294 - 113852645771.7
putrescine/spermidine abc transporter atp-binding proteinBKL49_05735Not Available+1138827 - 113994542310.9
spermidine/putrescine abc transporter permease potbBKL49_05740Not Available+1139929 - 114078932122.2
spermidine/putrescine abc transporter permease potcBKL49_05745Not Available+1140789 - 114155928455.7
spermidine/putrescine abc transporter substrate-binding proteinBKL49_05750Not Available+1141692 - 114277439863.1
protein tlddBKL49_05755Not Available-1142885 - 114433351666.1
16s rrna (cytidine(1402)-2'-o)-methyltransferaseBKL49_05760Not Available-1144387 - 114523531476.9
penicillin-binding protein activatorBKL49_05765Not Available+1145313 - 114703462898.2
yran family proteinBKL49_05770Not Available+1147036 - 114739513791.3

Displaying genes 1121 – 1130 of 2316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites